rs27628219 SNP Detail

Summary

• ID
  rs27628219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141461389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGGACC TTCAGAAGAG
  CAGTCGGGTG CTCTTACCCA CTGAGCCATC TCACCAGCCC AAGAAACAAC TTTAAAGATA
  CAAAGTTGTT ACAAAGTCTC CTGAGTGGGC ACGATCAATA TTTTGGGTAC AATAAAAGGA
  TTTTAGCCAC TTGGGATAAG TTAACATTAT GTTTTGAGAA AGCCTCCTGT GGTCTCTGCT
  R
  GCTTCCAAGT CAGGGTAACG CTCAGGAGGG CCTTGAACTT GGCATCTTAT TGGCAGTCCT
  ATATGCTCAG ATCACAAGCC TACCCTCTTT GGTATAGGAA CTGGACTCAC AACTAATCGC
  GCTGCATCCT CAAACTATAC TTTTTTTTTT TAAACAAGAT TTATTTTGTG TGTATGGATA
  TTTTGCCTGC AGGCATAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785201	NES09119545	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A		A	A	A		G
ss321389367	CHEV_4_141289993	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27628219					SNP	A	A	G	A	A	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785201	NES09119545	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141461389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	838 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603869	regulatory region 603869	1606 bp distal
Rr603870	regulatory region 603870	574 bp proximal
Rr603871	regulatory region 603871	1075 bp proximal