rs27628218 SNP Detail

Summary

• ID
  rs27628218
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141461408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCGGGT GCTCTTACCC
  ACTGAGCCAT CTCACCAGCC CAAGAAACAA CTTTAAAGAT ACAAAGTTGT TACAAAGTCT
  CCTGAGTGGG CACGATCAAT ATTTTGGGTA CAATAAAAGG ATTTTAGCCA CTTGGGATAA
  GTTAACATTA TGTTTTGAGA AAGCCTCCTG TGGTCTCTGC TAGCTTCCAA GTCAGGGTAA
  S
  GCTCAGGAGG GCCTTGAACT TGGCATCTTA TTGGCAGTCC TATATGCTCA GATCACAAGC
  CTACCCTCTT TGGTATAGGA ACTGGACTCA CAACTAATCG CGCTGCATCC TCAAACTATA
  CTTTTTTTTT TTAAACAAGA TTTATTTTGT GTGTATGGAT ATTTTGCCTG CAGGCATAGT
  TAATATGTGC AGCCCATGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785200	NES09119546	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C		C	C	C		G
ss321389369	CHEV_4_141290012	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27628218					SNP	C	C	G	C	C	C	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785200	NES09119546	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141461408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	819 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603869	regulatory region 603869	1625 bp distal
Rr603870	regulatory region 603870	555 bp proximal
Rr603871	regulatory region 603871	1056 bp proximal