rs27628216 SNP Detail

Summary

• ID
  rs27628216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141462138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATGACA TACTGCAGCA
  CTGGGGAGAT CTTGGCAGGA GAGTCTGGGG TTTGAAGTCA GCTTGGGTTA CAACCAAAGG
  CCATTTCTCA AATAATTAAA TACACGAAAG CATGATTCTG AAGTGAACTT CTGAAGTGCG
  GCAACTACGC TAGCAGGCTG TACAGCTGGA TACAGCTGCT TCTCCAGGCA GAAGCAACTC
  Y
  GCATCCTTAA ACTTCACTCT TCGCCATGAG ATTCTTTTGG AGTCAAACCG GTTGCTGAGA
  ACTTTCTCTT CCTGGGGAAG ACAGGCTTTA ATCTGAAATC TGCCACGTTT TCTATAGAAT
  CGCTTCCCAC GCAGACTCAC GAAAAGTCTT TGAAACCCAC TAGGACATCT CTACGGTCAC
  GTTTGCCCAG GAAGCGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785198	NES09119467	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	C	C	C	C		T	C	C	C		C
ss321389374	CHEV_4_141290742	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27628216					SNP	C	C	T	T	C	T	C	C	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785198	NES09119467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141462138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	89 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603870	regulatory region 603870	within coordinates
Rr603871	regulatory region 603871	326 bp proximal