rs27628215 SNP Detail

Summary

• ID
  rs27628215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141462272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCGGCAA CTACGCTAGC
  AGGCTGTACA GCTGGATACA GCTGCTTCTC CAGGCAGAAG CAACTCCGCA TCCTTAAACT
  TCACTCTTCG CCATGAGATT CTTTTGGAGT CAAACCGGTT GCTGAGAACT TTCTCTTCCT
  GGGGAAGACA GGCTTTAATC TGAAATCTGC CACGTTTTCT ATAGAATCGC TTCCCACGCA
  R
  ACTCACGAAA AGTCTTTGAA ACCCACTAGG ACATCTCTAC GGTCACGTTT GCCCAGGAAG
  CGCTTCTGCG CAAGAGCCTT CATCCCTAAT GCGCCTGCGC AACAGCACAG CCTGTGGCGC
  ACAGGCGTGA TGGGCGGGTC CGTCTACTCA CAGTGACTCT CAGCCAATGC CTACTTCTGC
  GAATGTGGGG ATGGGTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785197	NES09119468	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628215					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785197	NES09119468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141462272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	within coordinates
Gm34863	predicted gene, 34863	within coordinates
Rr603870	regulatory region 603870	within coordinates
Rr603871	regulatory region 603871	192 bp proximal