rs27628212 SNP Detail

Summary

• ID
  rs27628212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141462628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCAGCC AATGCCTACT
  TCTGCGAATG TGGGGATGGG TTGCTAGGTG ACTGTGGCCC GGGTGGATGC TGCGGAAGTA
  AGGGTCCAGC CTTAAACCTG TGGAGTGCAG CTTCTTCGTG CTGCTGCTCT TTCCTCAGTC
  TTGGAACCCA CTCGTCTCCC ACTCCGCGGT CTGGAAAGCT TTGGATCCTG AGAGACGCAG
  Y
  CGGGGTGTGT CTGGCCTGCA CCCACTTAGG GACTTTCCTG CTTCAGGGAA AGGGTCAGAT
  CCTGCCTGAT GCAGGGATGT GGAGTCCTGG GCATAGCTTC CCTGCAGCTT CCCTGCAGCT
  ACTTTGGTCA GGGCTGGTTG CTCACGCTTG TCCAAATCAG GTTTTGTCAT GAATGGTTGT
  TATGAAGGAC AATAGTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785194	NES09119472	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628212					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785194	NES09119472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141462628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	50 bp distal
Gm34863	predicted gene, 34863	within coordinates
Rr603870	regulatory region 603870	165 bp distal
Rr603871	regulatory region 603871	within coordinates