rs27628211 SNP Detail

Summary

• ID
  rs27628211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141462633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAATGC CTACTTCTGC
  GAATGTGGGG ATGGGTTGCT AGGTGACTGT GGCCCGGGTG GATGCTGCGG AAGTAAGGGT
  CCAGCCTTAA ACCTGTGGAG TGCAGCTTCT TCGTGCTGCT GCTCTTTCCT CAGTCTTGGA
  ACCCACTCGT CTCCCACTCC GCGGTCTGGA AAGCTTTGGA TCCTGAGAGA CGCAGTCGGG
  R
  TGTGTCTGGC CTGCACCCAC TTAGGGACTT TCCTGCTTCA GGGAAAGGGT CAGATCCTGC
  CTGATGCAGG GATGTGGAGT CCTGGGCATA GCTTCCCTGC AGCTTCCCTG CAGCTACTTT
  GGTCAGGGCT GGTTGCTCAC GCTTGTCCAA ATCAGGTTTT GTCATGAATG GTTGTTATGA
  AGGACAATAG TTCAAAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785193	NES09119473	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628211					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785193	NES09119473	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141462633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	55 bp distal
Gm34863	predicted gene, 34863	within coordinates
Rr603870	regulatory region 603870	170 bp distal
Rr603871	regulatory region 603871	within coordinates