rs27628209 SNP Detail

Summary

• ID
  rs27628209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141463653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAATAAC AAATAAAACC
  TCAAATTAAC CGGGGCTGGA GGGATGTTTC TTAATTGCTG CAGATACAAG CGCTTGCTGT
  TTCTACAGAG GACCTAGGTT CAGTTCTCAG CACCTACATC AGGTGACCCT CTAGCCTTCA
  AGGGCACCTT CATGCACATG GTACACCTAA ACTCAACACA TATATATAAA TGCAAGATTT
  R
  AAAACATAGT AGCCAGGTGG TGGTGATGCA CACCTTTAAT CTCAGTGCTT AGGAGGCAGA
  GGCAAGTGGT TTTCTGAGGT CTGTCTGTCT GCTTAGTGAG TTCCAGGACA TCCAAGGCTA
  CACAGAAAAA CCCTGTCTTG GTGCCTTGCC CCTCTCCCAC GCAAGTGTTC AATATCAGGC
  CCCCAAGTAG CTGGGACGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37785191	NES09119440	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27628209					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785191	NES09119440	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141463653 () rs orientation: forward

Symbol	Name	Function Class
Gm34863	predicted gene, 34863	within coordinates
Rr603870	regulatory region 603870	1190 bp distal
Rr603871	regulatory region 603871	893 bp distal