rs27628207 SNP Detail

Summary

• ID
  rs27628207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141463832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAA ATGCAAGATT
  TAAAAACATA GTAGCCAGGT GGTGGTGATG CACACCTTTA ATCTCAGTGC TTAGGAGGCA
  GAGGCAAGTG GTTTTCTGAG GTCTGTCTGT CTGCTTAGTG AGTTCCAGGA CATCCAAGGC
  TACACAGAAA AACCCTGTCT TGGTGCCTTG CCCCTCTCCC ACGCAAGTGT TCAATATCAG
  R
  CCCCCAAGTA GCTGGGACGA ATGGTTTTCT CCCAGATAGA TGCTTAATAC TAAAGGAGAA
  TCCCTTATAG ATCCTGGATG TCTTCTCTCT GTGTGTCCGT GTACAACGCT CTCCTCCCTG
  GCCTTTTGTC CTTTGAACTG GAGCTGCTCT TTTCTTCCTG GACTCTCAGT TTCCTGTTTG
  TCTAAGGCAG TGGTTCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785189	NES09119383	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628207					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785189	NES09119383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141463832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	1254 bp distal
Gm34863	predicted gene, 34863	within coordinates
Rr603870	regulatory region 603870	1369 bp distal
Rr603871	regulatory region 603871	1072 bp distal