rs27627889 SNP Detail

Summary

• ID
  rs27627889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143105923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGTCTT ATGGAGCCCA
  GGCAAGGCTC AAACTGAAGG TGACCTTGAA CTATGCTTCT CCTGCTCATA CAACCTAACT
  GCTGGGATGG CAAACATGTA TCCCCACTCC TGAATCTGGA TCTATTGAAC TGAAAAAACA
  AACAAACAAA CAAATAAACA AACCATAGAG CGTCCTGTAT TTCACTATTT AGTCAGAGTT
  R
  ACCAGGGTGG GCTTGAAGAA AAGTGGGGTT CATTTGCCCC CTACTGCTCA GATGCTCTAG
  AGGATGCTGG CACCTCCAGC CCCAACAGTA CTCTTCTTGT TCCTTTTTCC TCTCCTTCAT
  GACCTCTGCC TTCCCATTCC CAAAGCCTGA ATAGGGAGTT CAGTGAAGAA GACTCGGAAA
  TTCTGTTCAG CTTTAGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37794115	NES09118193	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A		G
ss321404594	CHEV_4_142969256	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27627889					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794115	NES09118193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143105923 () rs orientation: forward

Symbol	Name	Function Class
Rr604202	regulatory region 604202	1 bp proximal