rs27627870 SNP Detail

Summary

• ID
  rs27627870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143109043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCATCT ATGGTCTCTC
  TCCAGAGGAA AGATGGATTT GAATTTCTAA CAAGGTTGAG TCTTCTCTCT GTGGCCACAT
  CAAAGTAGGT CATGAATCTG CTCCCACAGA TTTCCCTGTC AGAAAGAGAG CTGGCGCTCA
  GCCTGGCTCT TGATGGGAAG TTAATAGATT ATTTCGCACC CAGAAGCCTT TGGTCTGTAT
  R
  GAGATGCTGG GGATAGAGAG TCAGATCACA ATGTTAAATG CCGGGAGGTG GGGGATAGCC
  TGTTTTGACA GCAAGGTAAT TTTCAGACAA GCTCGCTGGC ACCCTCTTAT GAATAGGGAT
  GTGTTTAAAG AAAGATGGAA TGAGAAGCAA TTACCGCCCA GTGCACAGTT TTCTTAAAGT
  GTCTCTTTCC TGTGATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37794096	NES09118111	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27627870					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794096	NES09118111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143109043 () rs orientation: forward

Symbol	Name	Function Class
Rr604202	regulatory region 604202	1374 bp distal
Rr604203	regulatory region 604203	1990 bp proximal