rs27627866 SNP Detail

Summary

• ID
  rs27627866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143109384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGCAA TTACCGCCCA
  GTGCACAGTT TTCTTAAAGT GTCTCTTTCC TGTGATGCAC AGAATGGAAG CCAGGGCTTT
  GTGGATGCTA GACAAGTGTT CTGTGTCTGG GCTGTACCCT TGGCCCTTTC AAATGTTATT
  TTTGGTGATT TAGTTTTTTA ATTAATTGAT TTTATGTGTG TGTTTGTGTG TATGCGGGCG
  Y
  GCACCTGCCT TTCTGTGAAC TACATATGTT CACTGTCTCC AGAGGACAAA AGATGGGGAT
  GTAGGTGCTA GAAATTGAAC TCAAGTCTTC AAGAGCAACT AATGCTCTAG TGTTGAGCCG
  GCTCTCCAGT CTGTCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37794092	NES09118096	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27627866					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794092	NES09118096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143109384 () rs orientation: forward

Symbol	Name	Function Class
Rr604202	regulatory region 604202	1715 bp distal
Rr604203	regulatory region 604203	1649 bp proximal
Rr604204	regulatory region 604204	1879 bp proximal