rs27627722 SNP Detail

Summary

• ID
  rs27627722
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144921265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGACCCC AGAGGGGATG GAGGCACTGA GGGAAGGGAC
  GCCGCCCCAC TAGGGGTGTG CTGAAGAGAC ACTCGCACGT TGGAATCAAG CCTCGGGAGA
  M
  GTGACACCCA AAATCCAGTG GTGTCTCCAG GCTGCAGAGA CCGGTGCCCC GAGCCCGGGC
  CTGAAGTGCC AGCGACTCTC GGGCTCCGGG GTCCCCGCG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	FVB/NJ	KK/HlJ	LG/J	SM/J
ss37799259	NES09122242	PERLEGEN	MM_PANEL2	f	SNP	C	C	A
ss321412786	CHEV_4_144784598	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	FVB/NJ	KK/HlJ	LG/J	SM/J
rs27627722					SNP	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37799259	NES09122242	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144921265 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15267	CpG island 15267			within coordinates
Rr398672	regulatory region 398672			222 bp upstream
Rr604318	regulatory region 604318			1478 bp distal
Rr604319	regulatory region 604319			within coordinates
Rr604320	regulatory region 604320			326 bp distal
Rr604321	regulatory region 604321			300 bp proximal
Rr604322	regulatory region 604322			392 bp proximal
Rr604323	regulatory region 604323			2000 bp proximal
Tssr44481	transcription start site region 44481			258 bp downstream
Tssr44482	transcription start site region 44482			272 bp downstream
Tssr44483	transcription start site region 44483			304 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant