rs27627721 SNP Detail

Summary

• ID
  rs27627721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144922542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC TTTCTATGGC TTTCTCTGGT
  Y
  CACTTGACTC ACAAAATGCT TCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J
ss37799258	NES09122164	PERLEGEN	MM_PANEL2	f	SNP			T		T	C
ss147848437	ENSMUSSNP2068034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss321412798	CHEV_4_144785875	CHEVERUD	SCREENING_POP	f	SNP							C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J
rs27627721					SNP	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37799258	NES09122164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144922542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	631 bp distal
Rr398672	regulatory region 398672	754 bp downstream
Rr604319	regulatory region 604319	978 bp distal
Rr604320	regulatory region 604320	1603 bp distal
Rr604321	regulatory region 604321	477 bp distal
Rr604322	regulatory region 604322	864 bp distal
Rr604323	regulatory region 604323	723 bp proximal
Tssr44481	transcription start site region 44481	1008 bp upstream
Tssr44482	transcription start site region 44482	979 bp upstream
Tssr44483	transcription start site region 44483	928 bp upstream
Vps13d	vacuolar protein sorting 13D	967 bp upstream