rs27627164 SNP Detail

Summary

• ID
  rs27627164
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140259627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCCTGA CTCCACTGCC
  CTCCCTGTCC CATGAGCAGG AGGCAGAGAC CCCAGGCCAT GCAGGCTTGC CCGATACCCC
  ACCTCATCCC AGGAGAGCAC ACCCAGCATG CCCCAGGCCT GCTGTCCCCA GTCGGGCTTT
  TTTTTTTTTA ATTAAGATGC AACATCACCC CACAGCGGGC TCTCCCTCCA GCGACAGCTC
  M
  GAGTGAACTC CAGACTGACT GGATTAGACT TTGAAGGTGA CGATGCAGAT AATGAACACA
  GAGAACGCCG TGTTGACACA GGCCCTGGCG AGCCACATTA TTATTTAACA GGCCTTGCTT
  TCTGCCTCTG CTGGGATCAA GGAGCCGAAC GCAATTGCTG GTAGGCGTAA AAGCCCGAGG
  CAGCAGTGGC CCAGCTCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37789297	NES09128780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27627164					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37789297	NES09128780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140259627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef10l	Rho guanine nucleotide exchange factor 10-like			Intron
				Noncoding-Transcript-Variant
Rr603456	regulatory region 603456			881 bp distal
Rr603457	regulatory region 603457			within coordinates
Rr603458	regulatory region 603458			1223 bp proximal