rs27627163 SNP Detail

Summary

• ID
  rs27627163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140259654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGAGC AGGAGGCAGA
  GACCCCAGGC CATGCAGGCT TGCCCGATAC CCCACCTCAT CCCAGGAGAG CACACCCAGC
  ATGCCCCAGG CCTGCTGTCC CCAGTCGGGC TTTTTTTTTT TTAATTAAGA TGCAACATCA
  CCCCACAGCG GGCTCTCCCT CCAGCGACAG CTCCGAGTGA ACTCCAGACT GACTGGATTA
  S
  ACTTTGAAGG TGACGATGCA GATAATGAAC ACAGAGAACG CCGTGTTGAC ACAGGCCCTG
  GCGAGCCACA TTATTATTTA ACAGGCCTTG CTTTCTGCCT CTGCTGGGAT CAAGGAGCCG
  AACGCAATTG CTGGTAGGCG TAAAAGCCCG AGGCAGCAGT GGCCCAGCTC CACGGGGCCT
  GAACCGAGCA AGGTCAGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37789296	NES09128781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27627163					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37789296	NES09128781	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140259654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef10l	Rho guanine nucleotide exchange factor 10-like			Intron
				Noncoding-Transcript-Variant
Rr603456	regulatory region 603456			908 bp distal
Rr603457	regulatory region 603457			within coordinates
Rr603458	regulatory region 603458			1196 bp proximal