rs27626707 SNP Detail

Summary

• ID
  rs27626707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139823779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC AGCAGAGACC AGCAACCCAC
  Y
  TCAGCCACCA GGGGGTGCAG GGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37791128	NES09141475	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C		T	T		C
ss147690544	ENSMUSSNP1570137	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss321387255	CHEV_4_139652383	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27626707					SNP	T	T	T	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37791128	NES09141475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139823779 () rs orientation: forward

Symbol	Name	Function Class
Gm69840	predicted gene, 69840	1948 bp downstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603368	regulatory region 603368	1 bp proximal