rs27626173 SNP Detail

Summary

• ID
  rs27626173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139517836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTTGGA GACAGGCGTG
  GGCTGAACTC CAAAGCTTTA CACTCTTCTG TGGCTTGGAT TGGCACGGGG TGGAGCTCTA
  ACAAATGGGC CAGGCTGGGC CAGCGAGCTT TCAGAGATTT GCCTGCCTCA ACCTCGCCAG
  TCCTGGGATC ATAAACCTGT GTCAACTCCC GGCTGTTATT CATTCCAATG ACTAGTTCAC
  R
  TAAGCCGCCT ATTAGCATCA GAGAGCCACG GTAGACACCA CTTCTTGACT TCTTAGTCCT
  GTCTATGAGG GCGTGGCCAG AGCAGCCAAG GCTTGCTTGA CAAGGTCTCT AGAGAAATTG
  GAGGAACCAG AGATGGTGGC TCAGGCTGGG GGGTGGGGGT GGGCTCTGTC TGCCTCCTCC
  CAGCCACAGG TGCTGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37792201	NES09131160	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27626173					SNP	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792201	NES09131160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139517836 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	Intron
Rr603302	regulatory region 603302	396 bp distal
Rr603303	regulatory region 603303	539 bp distal
Rr603304	regulatory region 603304	683 bp proximal