rs27625145 SNP Detail

Summary

• ID
  rs27625145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136638271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT CCCAGCAGAC TGCACAGAGG
  Y
  TCCAACAGGA GCTGACAGAT AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37775069	NES09151275	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C		T	C	T		C
ss147585021	ENSMUSSNP5365308	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321359217	CHEV_4_136466875	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27625145					SNP	T	C	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775069	NES09151275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136638271 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	within coordinates
Rr602496	regulatory region 602496	93 bp proximal
Rr602497	regulatory region 602497	434 bp proximal
Rr602498	regulatory region 602498	1997 bp proximal
Tssr39729	transcription start site region 39729	1110 bp downstream
Tssr39730	transcription start site region 39730	1102 bp downstream