rs27625144 SNP Detail

Summary

• ID
  rs27625144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136638365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG GGCCTTTTGC AGCTCAGTGG
  R
  TATGGACACA GATAGGTTTT CAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37775068	NES09151276	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A		G	A	A	G		A
ss147585026	ENSMUSSNP3806460	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321359218	CHEV_4_136466969	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27625144					SNP	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775068	NES09151276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136638365 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	within coordinates
Rr602496	regulatory region 602496	within coordinates
Rr602497	regulatory region 602497	340 bp proximal
Rr602498	regulatory region 602498	1903 bp proximal
Tssr39729	transcription start site region 39729	1204 bp downstream
Tssr39730	transcription start site region 39730	1196 bp downstream