rs27625143 SNP Detail

Summary

• ID
  rs27625143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136639475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCAGT GCTGACTCCA
  CATCCCACGG CCAGCAAGTG CCAACTCCAC CCACCTTGCT TACATAGGCA CGCTGGAGGT
  ACAGGGCGCC GTCTGTGTCA CACAGATGGG AAAATAGAGG CACGTGGCGG TTGGAATTGA
  CCCACGGAGG GAGATGTTTG GAGGGTGGAG AGTATATGCC AGGGCTCCTA TGCCAAGCTG
  K
  ACTGACCCAC CTTCCTCCAT TGAGGCTAGG AACAAGGTTG GCATTTCCTA GTGAAGTCTA
  GAAGAGAGCC GCTCTTGTCT GAGGCACACA GGGAGATTAG AACCCAGGTG ATCTTCCCAC
  AGAGAGAAGG GGAAGAGGGG GGTGGGAGAG AGAGAGAGGG AGAGAGGGGG AGAGAGAGAG
  AGAGAGAGGA GGGAGTCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37775067	NES09151278	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27625143					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775067	NES09151278	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136639475 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	within coordinates
Rr602496	regulatory region 602496	433 bp distal
Rr602497	regulatory region 602497	749 bp distal
Rr602498	regulatory region 602498	793 bp proximal
Rr602499	regulatory region 602499	1993 bp proximal