rs27625141 SNP Detail

Summary

• ID
  rs27625141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136640238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCT TGGTGAGAAC AGAGCCTCAG
  Y
  CCAACCTCCT CCTCTCAGCC GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37775065	NES09151281	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	C		C	T		T	C	T		T
ss45725080	mCV22557267	ABI	CRAMUS_MOUSE	f	SNP		T						T	C
ss147585041	ENSMUSSNP777017	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321359221	CHEV_4_136468842	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27625141					SNP	T	T	T	T	C	C	C	T	C	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775065	NES09151281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136640238 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	within coordinates
Rr602496	regulatory region 602496	1196 bp distal
Rr602497	regulatory region 602497	1512 bp distal
Rr602498	regulatory region 602498	30 bp proximal
Rr602499	regulatory region 602499	1230 bp proximal
Rr602500	regulatory region 602500	1816 bp proximal