rs27625139 SNP Detail

Summary

• ID
  rs27625139
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136640741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGGCGAA GGTGAAGCTC AGAAATGGTT TTGAATATTT
  TTTCTATTTA TTTATTTATT TATTTATTTA TTTATTTATT TATTTATTTA TTTTTGCCTC
  W
  GCAGCAGCTG CATGGTGGAA GACACTGCAT GGGAACATTA CGAGGCTGAA CAACCTTGGG
  CGAGTCACCT CTAGTCACTT GATCCCCTGG AAGGGGGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37775063	NES09151283	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T		A	T	A		T
ss147585052	ENSMUSSNP193868	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss321359224	CHEV_4_136469345	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27625139					SNP	A	T	T	T	T	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775063	NES09151283	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136640741 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	463 bp upstream
Rr602496	regulatory region 602496	1699 bp distal
Rr602498	regulatory region 602498	276 bp distal
Rr602499	regulatory region 602499	727 bp proximal
Rr602500	regulatory region 602500	1313 bp proximal