rs27625138 SNP Detail

Summary

• ID
  rs27625138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136641154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGATTCCC TGTGGTAAAA
  TGGTCACAGC TCAGGATCAG AGAGGTTAAG CAACTGGCCC AAAGTCACAC AGTAGGGGAA
  TCCATGATAG AAGCAGGGTT ATTGAGTCTG ACTTGTAGCT GACAAGCTGA GAGGTTTTCC
  CCCTCTGCTT CTCTTGGCTC AGGAGGAAGT ACTTAGAAAG GGAGCCTGGT CTCCTTTAAT
  M
  TGAATGTTTC CCTTTACACC TTTCTTTCTC TCTGTGGGTA TATGTGTGGT CAGAGCAGGA
  TACAGGGTAT CTTCTTCTAG GACTTTCTGC CTCATTGCTT TGAGACAGGC AGGGCCTCTC
  GCTGAGCCTG CAGCGTCACA GTTCAGCTAG CACAACTGAC TGCTGAGCGC CCAGGTTCCC
  CCGTCTCTGT CCCCACAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37775062	NES09151184	PERLEGEN	MM_PANEL2	f	SNP	C			A	C	C	C	C	A	C	C	C	C	C
ss147585070	ENSMUSSNP886360	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27625138					SNP	C	C	A	A	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775062	NES09151184	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136641154 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	876 bp upstream
Rr602498	regulatory region 602498	689 bp distal
Rr602499	regulatory region 602499	314 bp proximal
Rr602500	regulatory region 602500	900 bp proximal