rs27625134 SNP Detail

Summary

• ID
  rs27625134
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136642129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCTATT TCTGTCACAG
  GCCCCTCCCA GCAGAGCCCC TTCCTGGGAG AGTCAGGCAG TGCCTGCCAG GCTGTGTGCA
  GAGTGTCAAC CTCATGTCAC TCAGAGGCTG CTGCCAAACT GAGGAGCCCC CAGCGGGGGG
  CGCCCGGGGC CTGGCCTCCT TTCCCCTGGG CCGGGCCTTT CTCCTTCTTG CTGTCACAAC
  K
  TAGACTGCAG CCCCTGGGAG GTGACCCCAC TGGTGGTTTG AGTGGCTTGC CTGGGGCTGG
  GACCTGTCAG TGTAGGCTGG TCTTCAGGAA GCTGGAAGTC TGGTGGAAGG CTCAGCCTCA
  GCAGGGTGCT GGGGCAGGGG GCCCGTGGAG AGCACAGGGG CAGAACAGGC CTGACAGAAT
  CTGAATCTAC CCCTCAGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37775058	NES09151146	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27625134					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37775058	NES09151146	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136642129 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	1851 bp upstream
Rr602498	regulatory region 602498	1664 bp distal
Rr602499	regulatory region 602499	640 bp distal
Rr602500	regulatory region 602500	54 bp distal
Rr602501	regulatory region 602501	1573 bp proximal