rs27624461 SNP Detail

Summary

• ID
  rs27624461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148643700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTCGTCG CTAATTTGTA ACAGTAATTT TGCTACCGTT
  ATGAATCATA ATGTAAGCAG GCAGGGTATT GGTGGGTCTG TGACCCATTA TTTATCAACG
  R
  CAGCTGCTTC TGATTGTTTA CCCTTAACTA CCTCACAACA GTCTTATCGA AAGCACTGGA
  TATAAAATGG TCATCTGAGT GGGGTGGGAG TGGTGCACAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37803204	NES09113961	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27624461					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803204	NES09113961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148643700 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			300 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Mtor	mechanistic target of rapamycin kinase			1560 bp downstream
Rr398859	regulatory region 398859			720 bp downstream
Rr604703	regulatory region 604703			771 bp distal
Tssr40280	transcription start site region 40280			774 bp downstream
Tssr40281	transcription start site region 40281			743 bp downstream
Tssr40282	transcription start site region 40282			497 bp downstream