rs27624460 SNP Detail

Summary

• ID
  rs27624460
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148643744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC TTAACTACCT CACAACAGTC
  K
  TATCGAAAGC ACTGGATATA AAATG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss37803203	NES09113962	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G		T	G
ss321421186	CHEV_4_147933396	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs27624460					SNP	G	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803203	NES09113962	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148643744 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			344 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Mtor	mechanistic target of rapamycin kinase			1604 bp downstream
Rr398859	regulatory region 398859			764 bp downstream
Rr604703	regulatory region 604703			815 bp distal
Tssr40280	transcription start site region 40280			818 bp downstream
Tssr40281	transcription start site region 40281			787 bp downstream
Tssr40282	transcription start site region 40282			541 bp downstream