rs27624459 SNP Detail

Summary

• ID
  rs27624459
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148643872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG AGCCCATCCT AACCCAGGTC
  M
  TGTAAGAGAA GTGCTAAGCG CTCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37803202	NES09113936	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A		C
ss321421187	CHEV_4_147933524	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs27624459					SNP	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803202	NES09113936	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148643872 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			472 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Mtor	mechanistic target of rapamycin kinase			1732 bp downstream
Rr398859	regulatory region 398859			892 bp downstream
Rr604703	regulatory region 604703			943 bp distal
Tssr40280	transcription start site region 40280			946 bp downstream
Tssr40281	transcription start site region 40281			915 bp downstream
Tssr40282	transcription start site region 40282			669 bp downstream