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rs27624434 SNP Detail
Summary
  • ID
    rs27624434
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:148654485 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCCTCAGC AGCCCCTGGG
    TCGGATGCTG CACTGGCATC ATCTGCCATT GGTGTCTTTC TGAAGTCTCG TGACTTACAA
    GCATTTTGTT GTATTAATTG GAGCATAAAC AGGATTAAGA AATTGGAAAT CATCTTTCCT
    TGAGGCTTAT CTCCAGCTCT CAGAATTTAT AAGACAACCA GAGGAACGGG CTCGAGAGTT
    R
    GTGCAGGAAA GATCCCATGT CCAGGTGTCA GGCCTGGGCT CATTTATGCA ATCTGTTACT
    CCTTCTATGG CCTTCGCTTG GGAGGGGCAG GAGGCTGTGG GGAGAGCTCT TCACTCCATG
    ACCAGGCTGG CCTGCAACTC ACTGTGTAGC AGAACTTCTG ACCCTCCTGC TTCTGTTTCT
    CGAGTGCTGG GGTTTAGACC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37803170 NES09113742 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27624434 SNP A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37803170 NES09113742 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:148654485 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Exosc10 exosome component 10 Intron
Noncoding-Transcript-Variant
Gm13204 predicted gene 13204 152 bp upstream
Rr604704 regulatory region 604704 763 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory