rs27624431 SNP Detail

Summary

• ID
  rs27624431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148655124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCAGGC TCGAGAGATG
  CCCCTGCTCA AGGTACGCTG TGTTGATCAT TCAGCAGACC CATTCTCCAG CTCCTTCCTC
  CTGTGGCCCT GGAAAGCCCT GAGCTGCTCT CCTGTTCTCA GTCATCCTGA GGAGTGATGG
  TGGCTTGGGA AGCTGTGGGG TGTGTCGTGT TAGCTGTTGG GTTAGATTTA GCTGCTTTTA
  Y
  GTTCGCTGGT TTGGAGTTTG GAGTCTTAAG GTATGGGTTT TTTTTTAATA CTGGGGTTCA
  AGCCCAGGGC CTACTCACGC TACACAGGTG GTACTCTGCT GAGCTATTGC TCTAGCCTAC
  ACAGCTTTAA TTCAGTTTTT CTGTAGTCTG TGTGCATGAA GACGTACAGT ACAGCACACG
  TGTCTGGATC AGAATACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37803167	NES09113718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27624431					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803167	NES09113718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148655124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Gm13204	predicted gene 13204			791 bp upstream
Rr604704	regulatory region 604704			124 bp proximal