rs27624430 SNP Detail

Summary

• ID
  rs27624430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148655372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTGGGGT TCAAGCCCAG
  GGCCTACTCA CGCTACACAG GTGGTACTCT GCTGAGCTAT TGCTCTAGCC TACACAGCTT
  TAATTCAGTT TTTCTGTAGT CTGTGTGCAT GAAGACGTAC AGTACAGCAC ACGTGTCTGG
  ATCAGAATAC ATACTGCAGT TGTTTCCTTC CACTGTATGA GTCCTGGTTC TCATGCATGG
  Y
  GGTCAGAGCC CTCTCACCAG CAACTGCGCT TTTGTTTTTA ATGACAGTCA TAAATTAAGC
  CTTATCATTT ATGGCCTTTT TCATAATTTG ATAGCAAATA ACTAGGTCCT TTACTGATTG
  TAATAAAGCA GTTAATCTGG TAGAGTGAGC TGGAGTAGGG ACCTTGGCGT AGAGAGCTGG
  CAGTGAACAC CCAAACCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss37803166	NES09113691	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs27624430					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803166	NES09113691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148655372 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Gm13204	predicted gene 13204			1039 bp upstream
Rr604704	regulatory region 604704			within coordinates