rs27623538 SNP Detail

Summary

• ID
  rs27623538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139303306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC CCGAGATGTT GGTGGTAGAT
  Y
  CCCTTTCCCA TAGCAGGTGT AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37781274	NES09137392	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	C		T	C	C	C		T	T	C	C		C
ss45595778	mCV24063006	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss321382472	CHEV_4_139131910	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27623538					SNP	T	T	T	C	C	T	C	T	T	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37781274	NES09137392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139303306 () rs orientation: forward

Symbol	Name	Function Class
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	1265 bp distal
Rr603245	regulatory region 603245	1443 bp distal
Rr603246	regulatory region 603246	1350 bp distal
Tssr39955	transcription start site region 39955	1305 bp downstream
Tssr39956	transcription start site region 39956	1270 bp downstream