rs27623532 SNP Detail

Summary

• ID
  rs27623532
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139303942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGCTTG ACAGTAGTGT
  CTACTCAGCT TTCTGACTCG AGGAGGGGAA GGGTCTGTGC GTAGGTCTCA GGTCTGTGTG
  GGGGAGGGGC CCCTCTAGGC TCAGGCTCCA ATCTCAGCTG AGTGTAATTC TGGTTTTGTT
  GTCTTTACTT ATGAGGGAGT GGGGCCATTC CTTTCAATCC TAAACTCTCC CTGGAAGCTG
  K
  GCCTGGGCCT TCGCTCTTAC CCTCTACTGA AGACCACTGC CCCGGGAAGA AGTCAGGTGC
  TAGCTCCCAT CACCGGCAGG GGAGATTGTT AGCCACTTGG AAACCTTTTT GCTCCTCAGG
  GAAATCTGGA CTGTAAGAAG CAGCAGCCAG TGCTCCAGGG AGAGTGGGAT GAAGCCCGTG
  TTGGACGTCA TCAAGTAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37781268	NES09137401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623532					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37781268	NES09137401	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139303942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	646 bp distal
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	1901 bp distal
Rr603246	regulatory region 603246	1986 bp distal
Rr603247	regulatory region 603247	1881 bp proximal
Tssr39955	transcription start site region 39955	1941 bp downstream
Tssr39956	transcription start site region 39956	1906 bp downstream