rs27623168 SNP Detail

Summary

• ID
  rs27623168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136008703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCACTGG GGTCCCAGGG
  CAGTGGCCTC CCGATTCCAC TTCTGTCCTC GCTCTGAGCA GCATCCACCA GTCAGCCCCA
  CACTTGATCC TCACAGCAGC CCTGCAGTCA TTAGGGCGCG GCACCCAATT CTCAGCTCAG
  TGTCTCGCTC AGAAGGGGCT TAATGACCTG GGTTCAGCTG ATGCCCTTAA AGCCTAGAGA
  R
  CGCTGCTTGT TCTTGTTGTG CATTTTCAGT ACCATGGTCT ACAGTTTTTT GGAACCTACT
  TTCTTTGAGG AAGACCACCA GCAGAAGCAT TATGAGGCCA AGCTCCCCAC TCCTTGGGGC
  CTGATGCCCT CCTGCAGAGC CCGTTTGCTC TTCTCAGCCA GGCCAACCCC TGGGCCTTGC
  TTGTGGGACT TACCACCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777202	NES09155707	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623168					SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777202	NES09155707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136008703 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	1175 bp proximal