rs27623164 SNP Detail

Summary

• ID
  rs27623164
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136009304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGTTCA AGATGAAAGC
  TCTCCCTCCC ACCCACGGTT GGTCTCCACC TCTGAAGTGT CTACAGTCTG CAAGACTGCT
  GGGGTGTCAC CTCCCACCTT CCCAGTGAGA AGGGGGTGGT GGGCGGGGAC ATGACGGGAT
  GTCCGGCTAG GTGCAGCTGT AAGGGCAAGG GAGACCCAGG TCATTTCCTT TGAAATAGAA
  S
  GTTCGAAAGT AGGATTACAA ACACAGAGAC ATAGGGTTGT TTTTTGTTTT GTTTTGTTTT
  TTAAAGAATT GTTTATTTAT CTTATGCATA TGAGTACACT GTAGCTGTCT TCAGATACAC
  CAGAAGAGGA CACCGGATCT CATTACAGAT GGTTGTGAGC CATTATGTGG TTGCTGGGAT
  TTGAACTCAG GACCTCTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777198	NES09155711	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	G	C	C	G	G	C	C	G	C
ss147564494	ENSMUSSNP577683	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623164					SNP	G	G	C	C	C	C	C	G	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777198	NES09155711	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136009304 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	574 bp proximal
Rr602340	regulatory region 602340	1631 bp proximal