rs27623163 SNP Detail

Summary

• ID
  rs27623163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136009338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTTGGTC TCCACCTCTG
  AAGTGTCTAC AGTCTGCAAG ACTGCTGGGG TGTCACCTCC CACCTTCCCA GTGAGAAGGG
  GGTGGTGGGC GGGGACATGA CGGGATGTCC GGCTAGGTGC AGCTGTAAGG GCAAGGGAGA
  CCCAGGTCAT TTCCTTTGAA ATAGAACGTT CGAAAGTAGG ATTACAAACA CAGAGACATA
  S
  GGTTGTTTTT TGTTTTGTTT TGTTTTTTAA AGAATTGTTT ATTTATCTTA TGCATATGAG
  TACACTGTAG CTGTCTTCAG ATACACCAGA AGAGGACACC GGATCTCATT ACAGATGGTT
  GTGAGCCATT ATGTGGTTGC TGGGATTTGA ACTCAGGACC TCTGGAGGAG CAGTCAGTGC
  TCTTAACCGC TGAGCCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777197	NES09155712	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	C	G	G	C	C	G	G	C	G
ss147564499	ENSMUSSNP2223753	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623163					SNP	C	C	G	G	G	G	G	C	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777197	NES09155712	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136009338 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	540 bp proximal
Rr602340	regulatory region 602340	1597 bp proximal