rs27623162 SNP Detail

Summary

• ID
  rs27623162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136009890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGTTA AACATATTTG
  TGCTTTTAGA GTTTGGTTTT CAGTGCCCAT GTTGGGTGGC ACACTAGCTC ACGATGGCTT
  GTAAATCCAG CTCCAGGAGA TGTGACTCTT ACACACACAC ACACACACAC ACACACACAG
  TTAATGAAAT AAATCTTTTA AAAATATTTA TGAAAAAGAA TCATTTACAG AGCCCCACAG
  R
  AACACTCGCC CAGTAGCAAA TGCACACTTT AAAGACGTGC AAGAAGGGTC CTCACTTCCC
  CAGGACAGAC CAGGCTGGCG GGAAGCCTCC ACACCCAGTA GGTCATCATC ATTTGCTGAA
  TGCTGATGGA ACAGACAGGA CTTTCCAACT CAATCTAGAA AACCCAGAAG AGTATTTCTG
  CGTAACCCTG AACAATAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777196	NES09155673	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623162					SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777196	NES09155673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136009890 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	within coordinates
Rr602340	regulatory region 602340	1045 bp proximal