rs27623155 SNP Detail

Summary

• ID
  rs27623155
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136010807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAAATAG TGTGAAGATA
  AGGTCATCCC AGAGTGGACT TCCCAGACCT TCAGGCCACT GAATATACCC ACAGCATTTC
  TGGAAGTTTC TCCTGCTATG AAAGGCAGGC TCATCCAAAT ACCTACGGTC TTAGTGTTCA
  TTTTGTGCAG GTGTGTTTTA AATCCCTCCC CAACATCCTT AGCAGAGGCA ATTCCAACTG
  W
  ACAGAAAAGG AGAGAAGGGC TGGAGAGATA ACTTGGTGGT TCAAAGAGTA TACTGCTCTT
  GCAAAGGTCC CAAATTTGTT TTCCAGTGCT CATATAAGGT GGCTTACAAC TGTGGTATTT
  TACGAACGTG GCATAATAAT TCAAGAGAGA GCACTTCATT GGGCTCTGCC AAGGTGTCCC
  CTCAAACATT TAGGTCTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777189	NES09155680	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623155					SNP	A	T	T	T	T	T	A	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777189	NES09155680	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136010807 () rs orientation: forward

Symbol	Name	Function Class
Rr398613	regulatory region 398613	1749 bp upstream
Rr602339	regulatory region 602339	94 bp distal
Rr602340	regulatory region 602340	128 bp proximal
Tssr39694	transcription start site region 39694	1141 bp upstream
Tssr39695	transcription start site region 39695	1162 bp upstream
Tssr39696	transcription start site region 39696	1212 bp upstream
Zfp46	zinc finger protein 46	1187 bp upstream