rs27623152 SNP Detail

Summary

• ID
  rs27623152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136011478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTGCTG GGCGGAGCCT
  AGAGGGATGC TAACCACCAC CACCACCAGT AATTCCAGCA GGAACCGAAC ACTCTCTTCT
  GGCTTCTCCA GGCACCTGTA CTCACATGCT CATATCCCTC CCCTTTATAA ATAATTAAAG
  ATAAAATAAA ATTTAAAAAA GGAAATGGGC CTGGAGAGAT TTTTCTGAAA GATACCCAGC
  Y
  TAGGTCTGTC CAATCTTTAT GCCCATATTC TGGCTGTTGT AAATCCTTCA GGATTCTAAC
  TCACATGGTG GCTGGATACA TTTTACAGTA GGTAGAATAG TGCAATTTTG TGGCATCGAA
  ACATTTTTTA GTCCTACCCT TGGGAGCACA AGAGAAGCAC AGGTAGAAGA GATTCATTGT
  GGCTGGTAGG GGTCCTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777186	NES09155594	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	T	T	C	C	T	C
ss147564555	ENSMUSSNP5267512	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623152					SNP	T	T	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777186	NES09155594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136011478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	1653 bp proximal
Rr398613	regulatory region 398613	1078 bp upstream
Rr602339	regulatory region 602339	765 bp distal
Rr602340	regulatory region 602340	within coordinates
Rr602341	regulatory region 602341	1410 bp proximal
Rr602342	regulatory region 602342	1911 bp proximal
Tssr39694	transcription start site region 39694	470 bp upstream
Tssr39695	transcription start site region 39695	491 bp upstream
Tssr39696	transcription start site region 39696	541 bp upstream
Tssr39697	transcription start site region 39697	1894 bp upstream
Tssr39698	transcription start site region 39698	1948 bp upstream
Zfp46	zinc finger protein 46	516 bp upstream