rs27623079 SNP Detail

Summary

• ID
  rs27623079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136040358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTACTAT TGCCTTCCTC
  TTTCTCCTCT CATTAACTTC AACTAGACAT CAGTGGATGT TCAAATGAAG AGTTGTTTTG
  TGTCAGGAAA CAGCATTTGC ACAGTGTTTG ATGACTGATC AGGAATGGAT TGGCTATCTT
  AAGCTATAGT GCTTGAGGGT GACTTGTGGT TTCTATCTTG TGTCTTCAGG GACAGTAGGC
  W
  TTTTCGTGAG ACCCAGCTTC ATCTTGCCTT TACCTCTGTG CTGTGACATC TCTTGAGCCA
  CCCATTCTCT TCATCACATG GAATGTCACG CACACACTTA ATGCCCTGAC TTTGAGGTAG
  TGTAGACTGG CCTTGTATGC TTTTGTGATT TACTCTCTCT TCAGGGAATT GGTCCATTTC
  AGCATTATAT ACAGGCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777112	NES09154821	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623079					SNP	A	T	T	T	T	T	A	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777112	NES09154821	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136040358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15109	CpG island 15109			1288 bp distal
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr367756	regulatory region 367756			809 bp downstream
Rr602348	regulatory region 602348			1013 bp distal
Tssr39702	transcription start site region 39702			1993 bp downstream