rs27623043 SNP Detail

Summary

• ID
  rs27623043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136054101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTGTAG CCGGGCAGTG
  GTGGCGCACA CCTTTAATCC GCACTCGGGA GGCAGAGGCA AGCAGATTTC TGAGTTCAAG
  GACAGCCTGG TCTACAAAGT GAGTTCCAGG ACAGCCAGGG CTACACAGAG AAACCCTGTC
  TCGAAAAACC AAAAAAAAAA AAAAAAAAAT TGAAGTTGTG AGTACAGTTT TGTGTAGCTA
  Y
  CAGTTTCTGT TCAGTATAGA CCTTAACTTT TTGTCGATGG CCATAAGGCT TTTTTATGTT
  TGTTTTGTTT TTTTTGGGAC AAGATCATAC CCTATAATCT TGGCAAGGCT GGCACTACCT
  GTTTAGATGA GGCTGGCGTC GGAACACATG AGATTTACCT GCGTCTGCCT CACAAGTGCC
  TGTGTAACCT CATCTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777074	NES09154347	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	T	T	C	C	T	C
ss147565420	ENSMUSSNP2569697	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623043					SNP	T	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777074	NES09154347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136054101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr602351	regulatory region 602351			1477 bp proximal
Rr602352	regulatory region 602352			1861 bp proximal