rs27623041 SNP Detail

Summary

• ID
  rs27623041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136054522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATTTAA TCCAAATCAA
  CTGCCAGATT CAAATTGCCT GAGCTACACA GTGAGTTCCA GTACAGCCAG GGCTATACAG
  AGAAACCATG TCTCAAAAAC AGAGAAAGAA AGAAGGAACA CTAAGTATCT TGTGCCTTTA
  TCTCCTAACA GGAGACAGGA AGTCTGACTC TGGTTCTAAA ATGAAGAGTG CTTATGTTGG
  R
  TTCTAATAGG AAGTTTTATT TCAGGTCTTC GTAGGTAAAA TCCCAAGAGA CTTGTATGAG
  GATGAATTGG TGCCCCTTTT TGAGAAGGCT GGTCCTATCT GGGATCTACG GCTCATGATG
  GATCCACTCT CTGGTCAGAA CAGAGGCTAT GCATTCATCA CCTTCTGTGG AAAAGAAGCT
  GCGCAGGAAG CAGTTAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777072	NES09154309	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623041					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777072	NES09154309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136054522 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr602351	regulatory region 602351			1056 bp proximal
Rr602352	regulatory region 602352			1440 bp proximal