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rs27623039 SNP Detail
Summary
  • ID
    rs27623039
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:136054798 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTTTTGAGA AGGCTGGTCC
    TATCTGGGAT CTACGGCTCA TGATGGATCC ACTCTCTGGT CAGAACAGAG GCTATGCATT
    CATCACCTTC TGTGGAAAAG AAGCTGCGCA GGAAGCAGTT AAGCTGGTAT GTGGTAAGAG
    TCTGTCGTCC AAGAACTGAA CATTCCAGAG CATAAAGCGG TTCAACAGCA TTTGCAGCTA
    R
    CATTGCTTCA TTTTCTTTAG TCACTGCCTT TAATATCTTT ATATTGACTG ATTTGGTATG
    TAACCTTTTA TTTTTTCTGA TTATAATTCT AAGCTAACAA GGTTGGTTAG TATGATTTTA
    TTTAGTACCA AACAAATTCA GTTTTTTCTT TTACTGTCAC TTCTCGCTGT CGAGCTTTAG
    AATTGGTACT GAAGTATGAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37777070 NES09154313 PERLEGEN MM_PANEL2 f SNP A G G G G G A G G A A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27623039 SNP A G G G G G A G G A A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37777070 NES09154313 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:136054798 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hnrnpr heterogeneous nuclear ribonucleoprotein R Intron
Noncoding-Transcript-Variant
Rr602351 regulatory region 602351 780 bp proximal
Rr602352 regulatory region 602352 1164 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory