rs27623039 SNP Detail

Summary

• ID
  rs27623039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136054798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGAGA AGGCTGGTCC
  TATCTGGGAT CTACGGCTCA TGATGGATCC ACTCTCTGGT CAGAACAGAG GCTATGCATT
  CATCACCTTC TGTGGAAAAG AAGCTGCGCA GGAAGCAGTT AAGCTGGTAT GTGGTAAGAG
  TCTGTCGTCC AAGAACTGAA CATTCCAGAG CATAAAGCGG TTCAACAGCA TTTGCAGCTA
  R
  CATTGCTTCA TTTTCTTTAG TCACTGCCTT TAATATCTTT ATATTGACTG ATTTGGTATG
  TAACCTTTTA TTTTTTCTGA TTATAATTCT AAGCTAACAA GGTTGGTTAG TATGATTTTA
  TTTAGTACCA AACAAATTCA GTTTTTTCTT TTACTGTCAC TTCTCGCTGT CGAGCTTTAG
  AATTGGTACT GAAGTATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777070	NES09154313	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623039					SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777070	NES09154313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136054798 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr602351	regulatory region 602351			780 bp proximal
Rr602352	regulatory region 602352			1164 bp proximal