rs27623027 SNP Detail

Summary

• ID
  rs27623027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136057757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCCACCT CCAGAGTGCT
  GGAATTAAAG GAGTGTGCCA CCACGCCTGG CCTGCTCATT TTATTTTATT TATTATTTTT
  TTAAGATAGT TTTTGTTTGT TTTGTTTTGT TTTTAGTAAA GCTTAAGATC TTGACTCTTA
  CTTTGGTACA AACCCAAAAT AGGAACAATT TTTAGACATT GGAGTTCATT GTTATAAGGC
  Y
  GTACTTCAAT GTCCCTCACA TCACCAAAGG ATTTTACCTC CATAGTAGCT AAGAGTTGAC
  GAGTCTGCGG TGTCAAAGGA TGAATTGTAG GCACAGTTAT AGGATACAGA TTTCCTGCTT
  ATGATCAAAG CTTTTAGACT GAGTGAGCAT TTTACTTTTT AAATGTTGAG ATTGCACAAG
  TGAGATGGCT CAGCTAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777058	NES09154209	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27623027					SNP	C	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777058	NES09154209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136057757 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr602352	regulatory region 602352			1774 bp distal