rs27622924 SNP Detail

Summary

• ID
  rs27622924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141865484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGTACAA GGGCCAGCTT GGACTCTGAC CAAATCACGC
  TTTTCTGAGT AAATTTTCTC CATGTTTATT TGTTTTTCTT TAATCCAGCG TTGAGAGGCC
  R
  GGCTAGTTCT GGAATAGCAA ATAAACTTCA CCCTTGCAAG TCTGACTAAT ACTTGAAGTT
  TTGGAAAACG AGAGGTCCGA GGCCACTCTT GGATGGGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37783253	NES09127758	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	G	G	A	G	G	G	G	A
ss45607061	mCV23733706	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss147749682	ENSMUSSNP3994383	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27622924					SNP	A	A	G	G	G	A	G	A	A	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783253	NES09127758	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141865484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr377314	regulatory region 377314			within coordinates
Rr604003	regulatory region 604003			755 bp distal
Rr604004	regulatory region 604004			4 bp proximal