rs27622777 SNP Detail

Summary

• ID
  rs27622777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141889900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCAGTG TCCAGTCAAC
  ACAAGGCTTT CTAACATACA CACACACACA CACACACACA CACACACACA CACACACACA
  CAGCCACACA GCTAAGAATG TGGTACCCTG GATCTGTCAT CTGCCACAAA AGCCCCCCCA
  TCCCCACCCT CCCACCCCCG CGTTCACGCA AACTGACAGA GAGGCCCTGG GAGCCCCTGG
  R
  ACGCTATACT GGCTCAAGGT AAAGAAGTGG GCACAGCATC GAGCAAGGCA GCAGACGGCA
  AATCGGCCAG ACCAGAGGTG GGCCCTGGGG CCCTCACCTC AGCCAGCAGG TTCTCCATCC
  ACCCCAGGTG CATGAGAAGT CATTTAAATC TACAGACACA AGCATGAGAA GGACGACAGG
  GCCCTTCCTC CGCTGCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37783103	NES09129767	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A	A		G	A	A		A
ss321393260	CHEV_4_141718504	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27622777					SNP	A	A	G	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37783103	NES09129767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141889900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604012	regulatory region 604012			159 bp distal
Rr604013	regulatory region 604013			272 bp distal
Rr604014	regulatory region 604014			211 bp distal
Rr604015	regulatory region 604015			36 bp proximal
Rr604016	regulatory region 604016			1280 bp proximal