rs27620223 SNP Detail

Summary

• ID
  rs27620223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135622875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACACTG TGGCACTGAG
  GACCCAGAGG GGAAGTGGTA ACCGGTACGG AAGGCCAGAT CTCCTCTCAC TCACTTATCT
  GCACCAGACC TCCTCTCATT CACTCATCTG CGAAAGTGTG AGAGCAAGAA ACCCCAGGCT
  GGAGCTGCAG CTCTTGGGAC CTACGTGGGG GTCCCTGCTG GGTCTCCAGA TCTGGATACA
  K
  AATAGCCAGG ACAAGGCTCC ACAAGACCCT GGGGCCCAGC GGCTGACAAA TGACAGTGAG
  TGTAACTTCC TTTGTTGTTT TACTTCAGAC TCCTCGCTCC AGAAAGCCTA TGTTCTAACC
  TCAACTCTTC CCTAACTCTT CGCTAAGTAA AAGGGAACTG TCTGAGGCAG GGGGATGGAT
  GTCGGACTGG GAACATGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37778265	NES09154300	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27620223					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778265	NES09154300	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135622875 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	mRNA-UTR
Rr602183	regulatory region 602183	160 bp distal
Rr602184	regulatory region 602184	within coordinates
Rr602185	regulatory region 602185	407 bp proximal
Rr602186	regulatory region 602186	1308 bp proximal
Rr602187	regulatory region 602187	1431 bp proximal
Rr602188	regulatory region 602188	1459 bp proximal
Tssr39650	transcription start site region 39650	369 bp downstream
Tssr39651	transcription start site region 39651	168 bp downstream
Tssr39652	transcription start site region 39652	88 bp downstream