rs27620222 SNP Detail

Summary

• ID
  rs27620222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAGGAC AAGGCTCCAC
  AAGACCCTGG GGCCCAGCGG CTGACAAATG ACAGTGAGTG TAACTTCCTT TGTTGTTTTA
  CTTCAGACTC CTCGCTCCAG AAAGCCTATG TTCTAACCTC AACTCTTCCC TAACTCTTCG
  CTAAGTAAAA GGGAACTGTC TGAGGCAGGG GGATGGATGT CGGACTGGGA ACATGGGTCA
  Y
  AGCTCAAGAC TGGTTCTCCT GAGATAGAAT TTTCCTTGCC TTTCTTCACA GTAATAAACC
  CCCAAAACTT AGGTGGCCTT TTTGGGGGAG TCTATTTCTA TTTACCCCTG AAACAGATAG
  CCACTCTAGG CCAAAGAAAA TTTGCTTCCA GTCCAGCTTA GTGAATGGGA CAAACTTATT
  GGTGTTGTCT GTAGGGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37778264	NES09154301	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	T	T	T	T		T	T		C
ss147553181	ENSMUSSNP3413849	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss321353451	CHEV_4_135451682	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27620222					SNP	C	C	C	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778264	NES09154301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623078 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	363 bp distal
Rr602184	regulatory region 602184	69 bp distal
Rr602185	regulatory region 602185	204 bp proximal
Rr602186	regulatory region 602186	1105 bp proximal
Rr602187	regulatory region 602187	1228 bp proximal
Rr602188	regulatory region 602188	1256 bp proximal
Tssr39650	transcription start site region 39650	572 bp downstream
Tssr39651	transcription start site region 39651	371 bp downstream
Tssr39652	transcription start site region 39652	291 bp downstream