rs27620221 SNP Detail

Summary

• ID
  rs27620221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAATTC CACGCCACAC
  AGATCTTCTC TGTGGGTTGG GCTCTGCTCC AAGGCCCTTT CAAGGTTTCC TTTATTGGCT
  GCTCACAAGT CAACCTCTGT GGTTAAATGC TACCCTACCC CACACTCGGC AGAGGGAGGC
  TGCGTGCTAC TCCCCTGAAG TCCCAGGGGC ATCTCTTGAG AATATTGGCT TGAATATGAG
  Y
  ATTTTGGCGT CCTGGTCTAC TCTACTGGGC CATCCATAGC AGGTGGGGGT TTGAAAAGGA
  CTCCAGAAGA CTAAAGCCTT GGGACTCACC TGGGCAATCT GAAGCCTGTG GGGTTTTGTT
  TGTTTGTTTG TTGTTTGGTT TTGGTTTTTC AAGACAGGGT CTCTCTGTGT AGTCCTAGCT
  GTCCTGGCAC TCACTTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37778263	NES09154280	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T	T	T	T	C	T	T
ss147553266	ENSMUSSNP573058	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27620221					SNP	C	C	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778263	NES09154280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623759 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1860 bp upstream
Rr602183	regulatory region 602183	1044 bp distal
Rr602184	regulatory region 602184	750 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	424 bp proximal
Rr602187	regulatory region 602187	547 bp proximal
Rr602188	regulatory region 602188	575 bp proximal
Rr602189	regulatory region 602189	1821 bp proximal
Tssr39650	transcription start site region 39650	1253 bp downstream
Tssr39651	transcription start site region 39651	1052 bp downstream
Tssr39652	transcription start site region 39652	972 bp downstream