rs27620220 SNP Detail

Summary

• ID
  rs27620220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGCCACA CAGATCTTCT
  CTGTGGGTTG GGCTCTGCTC CAAGGCCCTT TCAAGGTTTC CTTTATTGGC TGCTCACAAG
  TCAACCTCTG TGGTTAAATG CTACCCTACC CCACACTCGG CAGAGGGAGG CTGCGTGCTA
  CTCCCCTGAA GTCCCAGGGG CATCTCTTGA GAATATTGGC TTGAATATGA GTATTTTGGC
  K
  TCCTGGTCTA CTCTACTGGG CCATCCATAG CAGGTGGGGG TTTGAAAAGG ACTCCAGAAG
  ACTAAAGCCT TGGGACTCAC CTGGGCAATC TGAAGCCTGT GGGGTTTTGT TTGTTTGTTT
  GTTGTTTGGT TTTGGTTTTT CAAGACAGGG TCTCTCTGTG TAGTCCTAGC TGTCCTGGCA
  CTCACTTTGT AGACCAGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37778262	NES09154281	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	G	T	G	G	T		T	G	G		T
ss147553271	ENSMUSSNP5278849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						G
ss321353458	CHEV_4_135452372	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27620220					SNP	T	T	G	G	G	G	T	G	G	T	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778262	NES09154281	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623768 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1851 bp upstream
Rr602183	regulatory region 602183	1053 bp distal
Rr602184	regulatory region 602184	759 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	415 bp proximal
Rr602187	regulatory region 602187	538 bp proximal
Rr602188	regulatory region 602188	566 bp proximal
Rr602189	regulatory region 602189	1812 bp proximal
Tssr39650	transcription start site region 39650	1262 bp downstream
Tssr39651	transcription start site region 39651	1061 bp downstream
Tssr39652	transcription start site region 39652	981 bp downstream