rs27620219 SNP Detail

Summary

• ID
  rs27620219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGCTCA CAAGTCAACC
  TCTGTGGTTA AATGCTACCC TACCCCACAC TCGGCAGAGG GAGGCTGCGT GCTACTCCCC
  TGAAGTCCCA GGGGCATCTC TTGAGAATAT TGGCTTGAAT ATGAGTATTT TGGCGTCCTG
  GTCTACTCTA CTGGGCCATC CATAGCAGGT GGGGGTTTGA AAAGGACTCC AGAAGACTAA
  R
  GCCTTGGGAC TCACCTGGGC AATCTGAAGC CTGTGGGGTT TTGTTTGTTT GTTTGTTGTT
  TGGTTTTGGT TTTTCAAGAC AGGGTCTCTC TGTGTAGTCC TAGCTGTCCT GGCACTCACT
  TTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCCGCCTGC TTCTGCCTCC CGAGTGCTGG
  GATTAAAGGC GTGTGCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37778261	NES09154282	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	A	G	A	A	G		G	A	A
ss321353459	CHEV_4_135452438	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27620219					SNP	G	G	A	A	A	A	G	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778261	NES09154282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623834 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1785 bp upstream
Rr602183	regulatory region 602183	1119 bp distal
Rr602184	regulatory region 602184	825 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	349 bp proximal
Rr602187	regulatory region 602187	472 bp proximal
Rr602188	regulatory region 602188	500 bp proximal
Rr602189	regulatory region 602189	1746 bp proximal
Tssr39650	transcription start site region 39650	1328 bp downstream
Tssr39651	transcription start site region 39651	1127 bp downstream
Tssr39652	transcription start site region 39652	1047 bp downstream
Tssr44006	transcription start site region 44006	1959 bp downstream